.gitignore
.gitmodules
.readthedocs.yaml
CHANGELOG.md
LICENSE
MANIFEST.in
Makefile
README.md
pyproject.toml
requirements-dev.txt
setup.py
tox.ini
.github/workflows/release.yml
docs/Makefile
docs/make.bat
docs/source/conf.py
docs/source/getting-started.rst
docs/source/index.rst
docs/source/api/index.rst
docs/source/api/c/basics.rst
docs/source/api/c/dataset.rst
docs/source/api/c/index.rst
docs/source/api/c/internal.rst
docs/source/api/c/utils.rst
docs/source/api/c/poishmm/index.rst
docs/source/api/c/poishmm/pois-hmm.rst
docs/source/api/c/poishmm/pois-params.rst
docs/source/api/c/poishmm/pois-probs.rst
docs/source/api/python/index.rst
docs/source/api/python/poishmm.rst
docs/source/api/python/utils.rst
docs/source/usrguide/examples.rst
docs/source/usrguide/index.rst
include/chainsaddiction.h
include/libvmath.h
src/chainsaddiction/Makefile
src/chainsaddiction/__init__.py
src/chainsaddiction/dataset.c
src/chainsaddiction/dataset.h
src/chainsaddiction/err.h
src/chainsaddiction/libma.c
src/chainsaddiction/libma.h
src/chainsaddiction/py.typed
src/chainsaddiction/read.c
src/chainsaddiction/read.h
src/chainsaddiction/restrict.h
src/chainsaddiction/scalar.h
src/chainsaddiction/typing.py
src/chainsaddiction.egg-info/PKG-INFO
src/chainsaddiction.egg-info/SOURCES.txt
src/chainsaddiction.egg-info/dependency_links.txt
src/chainsaddiction.egg-info/requires.txt
src/chainsaddiction.egg-info/top_level.txt
src/chainsaddiction/poishmm/Makefile
src/chainsaddiction/poishmm/__init__.pyi
src/chainsaddiction/poishmm/pois-em.c
src/chainsaddiction/poishmm/pois-em.h
src/chainsaddiction/poishmm/pois-fwbw.c
src/chainsaddiction/poishmm/pois-fwbw.h
src/chainsaddiction/poishmm/pois-hmm.c
src/chainsaddiction/poishmm/pois-hmm.h
src/chainsaddiction/poishmm/pois-params.c
src/chainsaddiction/poishmm/pois-params.h
src/chainsaddiction/poishmm/pois-probs.c
src/chainsaddiction/poishmm/pois-probs.h
src/chainsaddiction/poishmm/poishmm-module.c
src/chainsaddiction/poishmm/poishmm-module.h
src/chainsaddiction/poishmm/poishmm-object.h
src/chainsaddiction/poishmm/tests/Makefile
src/chainsaddiction/poishmm/tests/runtest.c
src/chainsaddiction/poishmm/tests/test-pois-em.c
src/chainsaddiction/poishmm/tests/test-pois-em.h
src/chainsaddiction/poishmm/tests/test-pois-hmm.c
src/chainsaddiction/poishmm/tests/test-pois-hmm.h
src/chainsaddiction/poishmm/tests/test-pois-params.c
src/chainsaddiction/poishmm/tests/test-pois-params.h
src/chainsaddiction/poishmm/tests/test-pois-probs.c
src/chainsaddiction/poishmm/tests/test-pois-probs.h
src/chainsaddiction/poishmm/tests/data/earthquakes.lprobs
src/chainsaddiction/poishmm/tests/data/params-3s
src/chainsaddiction/poishmm/tests/data/params-4s
src/chainsaddiction/poishmm/tests/data/ppr1
src/chainsaddiction/poishmm/tests/data/ppr2
src/chainsaddiction/poishmm/tests/data/ppr3
src/chainsaddiction/poishmm/tests/data/ppr4
src/chainsaddiction/poishmm/tests/data/ppr5
src/chainsaddiction/poishmm/tests/data/std3s.poisparams
src/chainsaddiction/tests/Makefile
src/chainsaddiction/tests/runtest.c
src/chainsaddiction/tests/test-dataset.c
src/chainsaddiction/tests/test-dataset.h
src/chainsaddiction/tests/test-read.c
src/chainsaddiction/tests/test-read.h
src/chainsaddiction/utils/Makefile
src/chainsaddiction/utils/__init__.pyi
src/chainsaddiction/utils/utils-module.c
src/chainsaddiction/utils/utils-module.h
src/chainsaddiction/utils/utils.c
src/chainsaddiction/utils/utils.h
src/chainsaddiction/utils/tests/Makefile
src/chainsaddiction/utils/tests/runtest.c
src/chainsaddiction/utils/tests/test-utils.c
src/chainsaddiction/utils/tests/test-utils.h
src/vmath/Makefile
src/vmath/alloc.h
src/vmath/config.h
src/vmath/core.c
src/vmath/core.h
src/vmath/print.h
src/vmath/rnd.c
src/vmath/rnd.h
src/vmath/stats.c
src/vmath/stats.h
src/vmath/vmath.c
src/vmath/vmath.h
src/vmath/tests/Makefile
src/vmath/tests/runtest.c
src/vmath/tests/test_rnd.c
src/vmath/tests/test_rnd.h
src/vmath/tests/test_stats.c
src/vmath/tests/test_stats.h
src/vmath/tests/test_vmath.c
src/vmath/tests/test_vmath.h
tests/Makefile
tests/README
tests/test-ext-earthquakes.py
tests/test-utils.py
tests/utils.py
tests/data/S4_N100
tests/data/S4_N500
tests/data/S4_N50_MID
tests/data/empty
tests/data/params_2s
tests/data/params_3s
tests/data/params_4s
tests/data/params_4s_MID
tests/data/test_15_100_50
tests/data/wrong_format
tests/data/centroids/centroids
tests/data/centroids/2s/delta.txt
tests/data/centroids/2s/gamma.txt
tests/data/centroids/2s/global-decoding.txt
tests/data/centroids/2s/init-delta.txt
tests/data/centroids/2s/init-gamma.txt
tests/data/centroids/2s/init-lambda.txt
tests/data/centroids/2s/lalpha.txt
tests/data/centroids/2s/lambda.txt
tests/data/centroids/2s/lbeta.txt
tests/data/centroids/2s/lcsp.txt
tests/data/centroids/2s/local-decoding.txt
tests/data/centroids/3s/delta.txt
tests/data/centroids/3s/gamma.txt
tests/data/centroids/3s/global-decoding.txt
tests/data/centroids/3s/init-delta.txt
tests/data/centroids/3s/init-gamma.txt
tests/data/centroids/3s/init-lambda.txt
tests/data/centroids/3s/lalpha.txt
tests/data/centroids/3s/lambda.txt
tests/data/centroids/3s/lbeta.txt
tests/data/centroids/3s/lcsp.txt
tests/data/centroids/3s/local-decoding.txt
tests/data/centroids/4s/delta.txt
tests/data/centroids/4s/gamma.txt
tests/data/centroids/4s/global-decoding.txt
tests/data/centroids/4s/init-delta.txt
tests/data/centroids/4s/init-gamma.txt
tests/data/centroids/4s/init-lambda.txt
tests/data/centroids/4s/lalpha.txt
tests/data/centroids/4s/lambda.txt
tests/data/centroids/4s/lbeta.txt
tests/data/centroids/4s/lcsp.txt
tests/data/centroids/4s/local-decoding.txt
tests/data/centroids/5s/delta.txt
tests/data/centroids/5s/gamma.txt
tests/data/centroids/5s/global-decoding.txt
tests/data/centroids/5s/init-delta.txt
tests/data/centroids/5s/init-gamma.txt
tests/data/centroids/5s/init-lambda.txt
tests/data/centroids/5s/lalpha.txt
tests/data/centroids/5s/lambda.txt
tests/data/centroids/5s/lbeta.txt
tests/data/centroids/5s/lcsp.txt
tests/data/centroids/5s/local-decoding.txt
tests/data/earthquakes/earthquakes
tests/data/earthquakes/2s/global-decoding.txt
tests/data/earthquakes/2s/init-delta.txt
tests/data/earthquakes/2s/init-gamma.txt
tests/data/earthquakes/2s/init-lambda.txt
tests/data/earthquakes/2s/lalpha.txt
tests/data/earthquakes/2s/lbeta.txt
tests/data/earthquakes/2s/lcsp.txt
tests/data/earthquakes/2s/ldelta.txt
tests/data/earthquakes/2s/lgamma.txt
tests/data/earthquakes/2s/llambda.txt
tests/data/earthquakes/2s/local-decoding.txt
tests/data/earthquakes/3s/global-decoding.txt
tests/data/earthquakes/3s/init-delta.txt
tests/data/earthquakes/3s/init-gamma.txt
tests/data/earthquakes/3s/init-lambda.txt
tests/data/earthquakes/3s/lalpha.txt
tests/data/earthquakes/3s/lbeta.txt
tests/data/earthquakes/3s/lcsp.txt
tests/data/earthquakes/3s/ldelta.txt
tests/data/earthquakes/3s/lgamma.txt
tests/data/earthquakes/3s/llambda.txt
tests/data/earthquakes/3s/local-decoding.txt
tests/data/earthquakes/4s/global-decoding.txt
tests/data/earthquakes/4s/init-delta.txt
tests/data/earthquakes/4s/init-gamma.txt
tests/data/earthquakes/4s/init-lambda.txt
tests/data/earthquakes/4s/lalpha.txt
tests/data/earthquakes/4s/lbeta.txt
tests/data/earthquakes/4s/lcsp.txt
tests/data/earthquakes/4s/ldelta.txt
tests/data/earthquakes/4s/lgamma.txt
tests/data/earthquakes/4s/llambda.txt
tests/data/earthquakes/4s/local-decoding.txt
tests/data/earthquakes/5s/global-decoding.txt
tests/data/earthquakes/5s/init-delta.txt
tests/data/earthquakes/5s/init-gamma.txt
tests/data/earthquakes/5s/init-lambda.txt
tests/data/earthquakes/5s/lalpha.txt
tests/data/earthquakes/5s/lbeta.txt
tests/data/earthquakes/5s/lcsp.txt
tests/data/earthquakes/5s/ldelta.txt
tests/data/earthquakes/5s/lgamma.txt
tests/data/earthquakes/5s/llambda.txt
tests/data/earthquakes/5s/local-decoding.txt
tests/params/params-4s
tests/params/earthquakes/3/linear.p
tests/params/earthquakes/3/quantile.p
tests/params/earthquakes/3/random.p
tests/params/earthquakes/4/linear.p
tests/params/earthquakes/4/quantile.p
tests/params/earthquakes/4/random.p