AUTHORS
ChangeLog
LICENSE
README.md
requirements.txt
setup.cfg
setup.py
crispy/__init__.py
crispy/association.py
crispy/benchmark_plot.py
crispy/data_matrix.py
crispy/ratio.py
crispy/utils.py
crispy/enrichment/__init__.py
crispy/enrichment/gsea.c
crispy/enrichment/gsea.o
crispy/enrichment/gsea.pyx
crispy/enrichment/gsea_setup.py
crispy/enrichment/plot_gsea.py
crispy/metric/raw_counts.py
crispy/regression/__init__.py
crispy/regression/linear.c
crispy/regression/linear.o
crispy/regression/linear.pyx
crispy/regression/linear.sh
crispy/regression/linear_setup.py
cy.egg-info/PKG-INFO
cy.egg-info/SOURCES.txt
cy.egg-info/dependency_links.txt
cy.egg-info/not-zip-safe
cy.egg-info/pbr.json
cy.egg-info/requires.txt
cy.egg-info/top_level.txt
extdata/association_example_data.csv
scripts/README.rst
scripts/__init__.py
scripts/plotting/__init__.py
scripts/plotting/annotate_bedpe.py
scripts/plotting/chromosome_plot.py
scripts/plotting/collateral_essentiality.py
scripts/plotting/collateral_essentiality_validation.py
scripts/plotting/copy_number_ratios.py
scripts/plotting/copy_number_shrna.py
scripts/plotting/qc_bias_assessment.py
scripts/plotting/svplot.py
scripts/plotting/svs_qc_assessment.py
scripts/plotting/tandem_size_bias.py
scripts/processing/__init__.py
scripts/processing/assemble_non_exp_genes.py
scripts/processing/calculate_cnv_ratio.py
scripts/processing/calculate_fold_change.py
scripts/processing/correct_cnv_bias.py
scripts/processing/correct_svs_bias.py
scripts/processing/tumour_ratios.py
test/__init__.py
test/association_example.py