.travis.yml
COPYING
Dockerfile
KNOWN_BUGS.rst
LICENSE
MANIFEST.in
README.rst
THANKS.rst
TODO.rst
project_quickstart.ini
requirements.rst
run_travis_tests.sh
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/code_doc.rst
docs/conf.py
docs/getting_started.rst
docs/include_links.rst
docs/index.html
docs/index.rst
docs/make.bat
docs/modules.rst
docs/project_quickstart.rst
docs/scripts.rst
docs/setup.rst
docs/version.rst
project_quickstart/__init__.py
project_quickstart/projectQuickstart.py
project_quickstart/project_quickstart.py
project_quickstart/version.py
project_quickstart.egg-info/PKG-INFO
project_quickstart.egg-info/SOURCES.txt
project_quickstart.egg-info/dependency_links.txt
project_quickstart.egg-info/entry_points.txt
project_quickstart.egg-info/not-zip-safe
project_quickstart.egg-info/requires.txt
project_quickstart.egg-info/top_level.txt
templates/DAP_template.rst
templates/cover_letter_template.rst
templates/file_with_include.rst
templates/lab_notebook_template.rst
templates/manuscript_template.rst
templates/module_template.py
templates/substitution_vars.rst
templates/template.R
templates/template.py
templates/version.py
templates/project_template/.gitignore
templates/project_template/.travis.yml
templates/project_template/COPYING
templates/project_template/Dockerfile
templates/project_template/KNOWN_BUGS
templates/project_template/LICENSE
templates/project_template/MANIFEST.in
templates/project_template/README.rst
templates/project_template/THANKS.txt
templates/project_template/TODO.rst
templates/project_template/external_dependencies.txt
templates/project_template/project_template.ini
templates/project_template/requirements.txt
templates/project_template/run_travis_tests.sh
templates/project_template/setup.cfg
templates/project_template/setup.py
templates/project_template/setup.py.bak
templates/project_template/tox.ini
templates/project_template/version.py
templates/project_template/version.py.bak
templates/project_template/docs/conf.py
templates/project_template/docs/conf.py.bak
templates/project_template/docs/getting_started.rst
templates/project_template/docs/index.rst
templates/project_template/project_template/dummy_holder.txt
templates/project_template/tests/file_to_compare_against.gold_std
templates/project_template/tests/sample_data.data
templates/project_template/tests/test_style.py
templates/project_template/tests/test_style.py.bak
templates/project_template/tests/tests.yaml
tests/__init__.py
tests/results_file_to_compare_against.assoc
tests/sample_data.bed
tests/test_style.py
tests/tests.yaml