Metadata-Version: 2.1
Name: pyfastq_filter
Version: 0.4.0
Summary: filters FASTQ files
Home-page: https://github.com/ahcm/pyfastq_filter
Author: Andy Hauser
Author-email: Andreas.Hauser@LMU.de
License: LICENSE
Description: # pyfastq_filter
        
        Filter FASTQ Files.
        
        # Installation
        
        ```bash
        pip3 install --user pyfastq_filter
        ```
        
        # Usage
        
        ```
        Usage:
          pyfastq_filter.py [-q i] [-l n] [-m m] [-o OUTNAME] FASTQ
        
        Options:
          -l --length=n      minimum length to let through [default: 300]
          -m --max-length=m  maximum length to let through [default: infinity]
          -q --quality=i     minimum quality to let through [default: 10]
          -o --outfile=FILE  output filename, otherwise STDOUT [default: -]
        ```
        
        
        Extract only FASTQ entries with sequence length >= 5000 and mean quality >= 12:
        
        ```bash
        pyfastq_filter.py -q 12 -l 5000 example.fastq > example-q12-l5000.fastq
        ```
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
