MANIFEST.in
README.md
setup.cfg
setup.py
scripts/densityMotifSimulation.py
scripts/emptyBackground.py
scripts/motifGrammarSimulation.py
scripts/variableSpacingGrammarSimulation.py
simdna/__init__.py
simdna/dinuc_shuffle.py
simdna/fileProcessing.py
simdna/pwm.py
simdna/util.py
simdna.egg-info/PKG-INFO
simdna.egg-info/SOURCES.txt
simdna.egg-info/dependency_links.txt
simdna.egg-info/requires.txt
simdna.egg-info/top_level.txt
simdna/resources/HOCOMOCOv10_HUMAN_mono_homer_format_0.001.motif.gz
simdna/resources/__init__.py
simdna/resources/encode_motifs.txt.gz
simdna/synthetic/__init__.py
simdna/synthetic/backgroundgen.py
simdna/synthetic/core.py
simdna/synthetic/dnase.py
simdna/synthetic/embeddablegen.py
simdna/synthetic/embeddables.py
simdna/synthetic/embedders.py
simdna/synthetic/loadedmotifs.py
simdna/synthetic/mutation.py
simdna/synthetic/positiongen.py
simdna/synthetic/quantitygen.py
simdna/synthetic/substringgen.py
test/test_background_generator.py
test/test_dnase_sim.py
test/test_multi_motif_embedding.py
test/test_pair_embeddable_generator.py
test/test_positional_embedding.py
test/test_pwm_sampling_and_density_sim.py