Metadata-Version: 2.1
Name: atom-tools
Version: 0.4.2
Summary: Collection of tools for use with AppThreat/atom.
Author-email: Caroline Russell <caroline@appthreat.dev>
License: Apache-2.0
Project-URL: Homepage, https://github.com/appthreat/atom-tools
Project-URL: Bug Tracker, https://github.com/appthreat/atom-tools/issues
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Classifier: Topic :: Security
Classifier: Topic :: Utilities
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: cleo >=1.0.0
Requires-Dist: jmespath >=1.0.0
Provides-Extra: dev
Requires-Dist: coverage ; extra == 'dev'
Requires-Dist: flake8 ; extra == 'dev'
Requires-Dist: isort ; extra == 'dev'
Requires-Dist: mypy ; extra == 'dev'
Requires-Dist: pre-commit ; extra == 'dev'
Requires-Dist: pylint ; extra == 'dev'
Requires-Dist: pytest ; extra == 'dev'
Requires-Dist: tox ; extra == 'dev'

# atom-tools
Collection of tools for use with slices generated by [AppThreat/atom](https://github.com/appthreat/atom).

## Install atom

This program does not generate slices; its purpose is to manipulate slices 
generated by atom. The current documentation for atom is housed in the
[AppThreat/atom](https://github.com/AppThreat/atom?tab=readme-ov-file) GitHub 
repository.

Atom can easily be installed from a 
[native image](https://github.com/AppThreat/atom#atom-native-image) or via npm 
`npm install @appthreat/atom`.

## Atom-tools installation

`pip install atom-tools`

## CLI Usage

Atom-tools uses py-poetry/cleo to construct its command-line interface and 
therefore uses the same sorts of conventions as the package management utility 
poetry.

To access the commands help menu, enter `atom-tools list` for a list of 
available commands.

Individual command options can be accessed with `atom help ` and the command 
name (e.g. `atom help convert`).
```
Atom Tools (version 0.4.0)

Usage:
  command [options] [arguments]

Options:
  -h, --help            Display help for the given command. When no command is given display help for the list command.
  -q, --quiet           Do not output any message.
  -V, --version         Display this application version.
      --ansi            Force ANSI output.
      --no-ansi         Disable ANSI output.
  -n, --no-interaction  Do not ask any interactive question.
  -v|vv|vvv, --verbose  Increase the verbosity of messages: 1 for normal output, 2 for more verbose output and 3 for debug.

Available commands:
  convert         Convert an atom slice to a different format
  help            Displays help for a command.
  list            Lists commands.
  validate-lines  Check the accuracy of the line numbers in an atom slice.
```

## Features
### Convert 
The convert command can be used to output an atom slice in a different format. 
The current capabilities are limited to processing usages in order to generate 
endpoints for an openapi 3.x paths object. Future iterations will populate the 
path item objects with more details based on atom slices.

```
Description:
  Convert an atom slice to a different format

Usage:
  convert [options]

Options:
  -f, --format=FORMAT              Destination format [default: "openapi3.0.1"]
  -i, --input-slice=INPUT-SLICE  Usages slice file
  -t, --type=TYPE                  Origin type of source on which the atom slice was generated. [default: "java"]
  -o, --output-file=OUTPUT-FILE    Output file [default: "openapi_from_slice.json"]
  -s, --server=SERVER              The server url to be included in the server object.
  -h, --help                       Display help for the given command. When no command is given display help for the list command.
  -q, --quiet                      Do not output any message.
  -V, --version                    Display this application version.
      --ansi                       Force ANSI output.
      --no-ansi                    Disable ANSI output.
  -n, --no-interaction             Do not ask any interactive question.
  -v|vv|vvv, --verbose             Increase the verbosity of messages: 1 for normal output, 2 for more verbose output and 3 for debug.

Help:
  The convert command converts an atom slice to a different format.
      Currently supports outputting an OpenAPI 3.x document based on a usages
      slice.
```

**Example**
>`atom-tools convert -i usages.slices.json -f openapi3.0.1 -o openapi_usages.json -t java -s https://myserver.com`


### Validate Lines
The validate-lines command checks the accuracy of the line numbers reported by
atom against your source files.

```
Description:
  Check the accuracy of the line numbers in an atom slice.

Usage:
  validate-lines [options]

Options:
  -i, --input-slice=INPUT-SLICE  Slice file to validate. [default: "slices.json"]
  -t, --type=TYPE                Origin type of source on which the atom slice was generated. [default: "java"]
  -d, --base-path=BASE-PATH      This should be the same path that was used by atom when the slice was generated.
  -l, --interval=INTERVAL        Try matching within a range. Ex. slice has line number 567, with interval of 5, we check lines 562-572. Use 0 for exact matching. [default: 5]
  -r, --report=REPORT            Output summary to file.  [default: "output.txt"]
  -j, --export-json=EXPORT-JSON  JSON report file to store invalid lines. Include valid lines as well using -v flag.
  -h, --help                     Display help for the given command. When no command is given display help for the list command.
  -q, --quiet                    Do not output any message.
  -V, --version                  Display this application version.
      --ansi                     Force ANSI output.
      --no-ansi                  Disable ANSI output.
  -n, --no-interaction           Do not ask any interactive question.
  -v|vv|vvv, --verbose           Increase the verbosity of messages: 1 for normal output, 2 for more verbose output and 3 for debug.
  
Help:
  Validate source file line numbers in an atom usages or reachables slice.
```

**Example**
>`atom-tools -v validate-lines -t java -j project_json_report.json -i usages.slices.json -d /home/my_project_dir`
