Metadata-Version: 2.1
Name: devbio-napari
Version: 0.1.1
Summary: A collection of napari plugins useful for studying developmental biology
Home-page: https://github.com/haesleinhuepf/devbio-napari
Author: Robert Haase
Author-email: robert.haase@tu-dresden.de
License: BSD-3
Project-URL: Bug Tracker, https://github.com/haesleinhuepf/devbio-napari/issues
Project-URL: Documentation, https://github.com/haesleinhuepf/devbio-napari#README.md
Project-URL: Source Code, https://github.com/haesleinhuepf/devbio-napari
Project-URL: User Support, https://github.com/haesleinhuepf/devbio-napari/issues
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Framework :: napari
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: BSD License
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE

# devbio-napari

[![License](https://img.shields.io/pypi/l/devbio-napari.svg?color=green)](https://github.com/haesleinhuepf/devbio-napari/raw/master/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/devbio-napari.svg?color=green)](https://pypi.org/project/devbio-napari)
[![Python Version](https://img.shields.io/pypi/pyversions/devbio-napari.svg?color=green)](https://python.org)

A collection of napari plugins useful for studying developmental biology.

* File input/output plugins
  * [aicsimageio](https://www.napari-hub.org/plugins/napari-aicsimageio)
  * [napari-itk-io](https://www.napari-hub.org/plugins/napari-itk-io) 
  * [ome-zarr](https://www.napari-hub.org/plugins/napari-ome-zarr)
* Image exploration and visualization tools
  * [animation](https://www.napari-hub.org/plugins/napari-animation)
* Image segmentation plugins
  * [Cellpose](https://www.napari-hub.org/plugins/cellpose-napari)
  * [StarDist](https://www.napari-hub.org/plugins/stardist-napari)
  * [oclrfc](https://www.napari-hub.org/plugins/napari-oclrfc)
  * [pyclesperanto-assistant](https://www.napari-hub.org/plugins/napari-pyclesperanto-assistant)
  * [Manual split & merge labels](https://www.napari-hub.org/plugins/napari-manual-split-and-merge-labels)
* Image registration
  * [PlatyMatch](https://www.napari-hub.org/plugins/PlatyMatch)
* Quantitative measurements
  * [scikit-image regionprops](https://www.napari-hub.org/plugins/napari-skimage-regionprops)
  * [plot-profile](https://www.napari-hub.org/plugins/napari-plot-profile)
* Utilities
  * [brightness-contrast](https://www.napari-hub.org/plugins/napari-brightness-contrast)
  * [plugin-search](https://www.napari-hub.org/plugins/napari-plugin-search)

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.

## Installation

You can install `devbio-napari` via [pip]:

    conda install -c conda-forge pyopencl jupyter notebook
    pip install devbio-napari

Windows users should install [pyopencl](https://documen.tician.de/pyopencl/) via conda **in advance**:

    conda install -c conda-forge pyopencl

[See also](https://github.com/clEsperanto/napari_pyclesperanto_assistant#Installation).

## Contributing

Contributions are very welcome. If you want to suggest a new napari plugin to become part of this distribution, please make sure it interoperates nicely with the other plugins. For example, if the plugin you suggest provided cell segmentation algorithms, please check if the resulting segmented cells can be analysed using napari-skimage-regionprops.

## License

Distributed under the terms of the [BSD-3] license,
"devbio-napari" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin
[file an issue]: https://github.com/haesleinhuepf/devbio/issues
[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/


