Metadata-Version: 1.1
Name: solida
Version: 0.7.3
Summary: NGS pipelines bootstrapper
Home-page: https://bitbucket.org/biopipelines/solida
Author: Gianmauro Cuccuru
Author-email: gmauro@crs4.it
License: GPLv3
Description-Content-Type: UNKNOWN
Description: Solida
        ======
        NGS pipelines bootstrapper
        
        |build|
        
        Installation
        ------------
        
        You can install the latest stable version from PyPI
        
        .. code:: console
        
            $ pip install solida
        
        
        Prerequisites
        -------------
        
        To run Solida, you need Conda.
        To install it, see `conda.io`_
        
        
        Usage
        -----
        
        To check version:
        
        .. code-block:: console
        
            $ solida -v
        
        To list all the pipelines enabled, digit
        
        .. code-block:: console
        
            $ solida list
            $ solida list --full
        
        To check if both pipeline and profile are available, digit:
        
        .. code-block:: console
        
            $ solida pipeline -l pipeline_label -p profile_label
        
        Before to deploy a pipeline, you have to create a project profile:
        
        .. code-block:: console
        
            $ solida pipeline -l pipeline_label -p profile_label --create-profile
        
        | Solida will create a yaml file named *profile_label.yaml* into *~/solida_profiles*.
        | Edit the *profile_label.yaml* to match your environment settings.
        
        
        After that, deploy the pipeline with:
        
        .. code-block:: console
        
            $ solida pipeline -l pipeline_label -p profile_label --deploy
        
        
        .. _conda.io: https://conda.io/miniconda.html
        
        .. |build| image:: https://travis-ci.org/gmauro/solida.svg?branch=master
           :target: https://travis-ci.org/gmauro/solida
           :alt: Continuous Integration
        
        .. |license| image:: http://img.shields.io/badge/license-GPLv3-blue.svg
           :target: https://github.com/gmauro/solida/blob/master/LICENSE
        
Keywords: NGS,pipeline deployment,bioinformatics
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
