LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
docs/Makefile
docs/preprocess.py
docs/source/about.rst
docs/source/citations.rst
docs/source/conf.py
docs/source/config_settings_glossary.rst
docs/source/configuration.rst
docs/source/development.rst
docs/source/glossary.rst
docs/source/illustrations.rst
docs/source/index.rst
docs/source/mavis.annotate.rst
docs/source/mavis.bam.rst
docs/source/mavis.cluster.rst
docs/source/mavis.illustrate.rst
docs/source/mavis.pairing.rst
docs/source/mavis.schedule.rst
docs/source/mavis.summary.rst
docs/source/mavis.validate.rst
docs/source/mavis_input.rst
docs/source/package.rst
docs/source/performance.rst
docs/source/pipeline.rst
docs/source/reference.rst
docs/source/supported_dependencies.rst
docs/source/theory.rst
docs/source/tutorial.rst
docs/source/_static/ENSG00000139687_RB1_overlay.png
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mavis/__init__.py
mavis/__init__.pyc
mavis/align.py
mavis/assemble.py
mavis/blat.py
mavis/breakpoint.py
mavis/config.py
mavis/constants.py
mavis/error.py
mavis/interval.py
mavis/main.py
mavis/tools.py
mavis/util.py
mavis.egg-info/PKG-INFO
mavis.egg-info/SOURCES.txt
mavis.egg-info/dependency_links.txt
mavis.egg-info/entry_points.txt
mavis.egg-info/requires.txt
mavis.egg-info/top_level.txt
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mavis/annotate/__init__.py
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mavis/annotate/fusion.py
mavis/annotate/genomic.py
mavis/annotate/main.py
mavis/annotate/protein.py
mavis/annotate/splicing.py
mavis/annotate/variant.py
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mavis/cluster/__init__.py
mavis/cluster/cluster.py
mavis/cluster/constants.py
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mavis/schedule/__init__.py
mavis/schedule/constants.py
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mavis/summary/__init__.py
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