Metadata-Version: 2.0
Name: galaxy-sequence-utils
Version: 1.1.2
Summary: Galaxy utilities for manipulating sequences Galaxy project.
Home-page: https://github.com/galaxyproject/sequence_utils
Author: Dan Blankenberg, Galaxy Project and Community
Author-email: galaxy-dev@lists.galaxyproject.org
License: AFL
Description-Content-Type: UNKNOWN
Keywords: planemo
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: Academic Free License (AFL)
Classifier: Operating System :: POSIX
Classifier: Topic :: Software Development
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Requires-Dist: six

Galaxy sequence_utils
----------------------

.. image:: https://badge.fury.io/py/galaxy_sequence_utils.svg
   :target: https://pypi.python.org/pypi/galaxy_sequence_utils/
   :alt: Planemo on the Python Package Index (PyPI)

.. image:: https://travis-ci.org/galaxyproject/sequence_utils.png?branch=master
   :target: https://travis-ci.org/galaxyproject/sequence_utils
   :alt: Build Status

Galaxy's sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.

This package can be installed into any Galaxy with Tool Shed: https://toolshed.g2.bx.psu.edu/view/devteam/package_galaxy_utils_1_0

Galaxy package itself is being maintained at https://github.com/galaxyproject/tools-devteam/tree/master/packages/package_galaxy_utils_1_0




History
-------

.. to_doc

---------------------
1.1.2 (2017-10-05)
---------------------

* Do not open compressed file twice in ``fastqNamedReader`` class
  `Pull Request 15`_

---------------------
1.1.1 (2017-09-19)
---------------------

* Fix fastq_filter.py , fastq_masker_by_quality.py , fastq_stats.py and
  fastq_to_fasta.py wrapper scripts
  `Pull Request 14`_
* Fix fastq_filter.py wrapper script
  `Pull Request 13`_

---------------------
1.1.0 (2017-02-13)
---------------------

* Support gz and bzip2 compressed files.
  `Pull Request 11`_
* Move wrapper scripts for Galaxy tools into this project and install as part of
  setup.py .
  `Pull Request 11`_

---------------------
1.0.2 (2017-02-02)
---------------------

* Apply common galaxyproject template to Python structure. 5e9bfc0_
* Merge in PEP-8 and Python 3 fixes from the core Galaxy project thanks to
  @nsoranzo.
  `Pull Request 4`_
* Implement project testings. a9b907c_
* First release published to PyPI.

---------------------
1.0.1 (2015-12-10)
---------------------

* Allow fastqJoiner to accept a string of bases to use between joined pairs.
  `Pull Request 2`_

---------------------
1.0.0 (2015-10-30)
---------------------

* Initial import extracted from Galaxy to build stand-alone dependencies for the
  tools in the Tool Shed.
* Use setuptools
  `Pull Request 1`_

.. github_links
.. _a9b907c: https://github.com/galaxyproject/sequence_utils/commit/a9b907c
.. _c68932a: https://github.com/galaxyproject/sequence_utils/commit/c68932a
.. _5e9bfc0: https://github.com/galaxyproject/sequence_utils/commit/5e9bfc0
.. _Pull Request 1: https://github.com/galaxyproject/sequence_utils/pull/1
.. _Pull Request 2: https://github.com/galaxyproject/sequence_utils/pull/2
.. _Pull Request 4: https://github.com/galaxyproject/sequence_utils/pull/4
.. _Pull Request 11: https://github.com/galaxyproject/sequence_utils/pull/11
.. _Pull Request 13: https://github.com/galaxyproject/sequence_utils/pull/13
.. _Pull Request 14: https://github.com/galaxyproject/sequence_utils/pull/14
.. _Pull Request 15: https://github.com/galaxyproject/sequence_utils/pull/15


