Metadata-Version: 1.1
Name: mtbparser
Version: 0.2.1
Summary: A module that parses different diagnostic variant data.
Home-page: https://github.com/qbicsoftware/qbic.mtbparser
Author: Sven Fillinger
Author-email: sven.fillinger@qbic.uni-tuebingen.de
License: MIT
Description-Content-Type: UNKNOWN
Description: About this module
        =================
        This Python module was designed to provide a simple parser for different diagnostic variant information data.
        
        How to use the SnvParser class
        ==============================
        
        Parsing a SNV file following the formats described above is fairly simple. Just create an ``SnvParser`` object with the path to the ``tsv``-file and specify its type by providing the correct header (``SSnvHeader, GSnvHeader, ...``).
        
        .. code-block:: python
            
            from mtbparser.snv_parser import SnvParser
            from mtbparser.snv_utils import SSnvHeader
        
            # Path to a valid SNV tsv file, as specified in
            # the file format documentation.
            somatic_snv_file = "/path/to/mySSnv.tsv"
        
            # Create parser object for somatic SNVs
            parser = SnvParser(somatic_snv_file, SSnvHeader)
        
            # Iterate through parsed SNV items and get the gene name
            for snv_item in parser.getSNVs():
                print(snv_item.get_snv_info(SSnvHeader.GENE.name))
        
                
        Detailed documentation
        ======================
        
        A more detailed documentation can be found on `Github <https://github.com/qbicsoftware/qbic.mtbparser>`_.
            
        Changelog
        =========
        
        v0.2.1
        ---------
        Fixes broken long description parsing in the setup.py, when trying to use pip for installation.
        
        v0.2
        ---------
        First official release with PyPI deployment.
Platform: UNKNOWN
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
