Metadata-Version: 1.1
Name: NanoSplit
Version: 0.1.3
Summary: Perform splitting of Oxford Nanopore sequencing data in a fail and pass dataset.
Home-page: https://github.com/wdecoster/nanosplit
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description: NanoSplit
        =========
        
        Perform splitting of Oxford Nanopore sequencing data in a fail and pass
        dataset using a user defined quality cutoff. The script can read
        compressed input and will write to gzip compressed files.
        
        INSTALLATION
        ~~~~~~~~~~~~
        
        ::
        
            pip install NanoSplit
        
        USAGE
        ~~~~~
        
        ::
        
            NanoSplit [-h] [-q QUALITY] [--outdir OUTDIR] fastqfile
        
        
            Required arguments:
              fastqfile             Fastq file to split, can be gz compressed.
        
            Optional arguments:
              -h, --help            show this help message and exit
              -q QUALITY, --quality QUALITY
                                    Splitting on this average read quality score
                                    Default: 12
              --outdir OUTDIR       Specify directory in which output has to be created.
        
        EXAMPLES
        ~~~~~~~~
        
        ::
        
            NanoSplit reads.fastq.gz
            NanoSplit -q 6 reads.fastq.gz
            NanoSplit -q 10 --outdir /home/user/datasetsplit/ reads.fastq
        
Keywords: nanopore sequencing processing trimming filtering
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
