Metadata-Version: 2.1
Name: coloc
Version: 0.3.4
Summary: the COLOC method by Giambartolomei et al.
Home-page: https://github.com/anthony-aylward/coloc.git
Author: Anthony Aylward
Author-email: aaylward@eng.ucsd.edu
License: UNKNOWN
Description: # coloc
        
        An implementation of the COLOC method for colocalization of GWAS and/or eQTL
        signals by [Giambartolomei et al](https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004383).
        
        # Installation
        
        ```sh
        pip3 install coloc
        ```
        or
        ```sh
        pip3 install --user coloc
        ```
        
        # Example usage
        
        ```python
        from coloc import coloc, print_coloc_result
        help(coloc)
        print_coloc_result('not colocalized', *coloc([1, 4, 9], [9, 4, 1]))
        ```
        ```
        not colocalized
        
        PP0: [|||||               ] [ 0.26540194014704316 ]
        PP1: [||||                ] [ 0.21657860877712054 ]
        PP2: [||||                ] [ 0.21657860877712054 ]
        PP3: [|||                 ] [ 0.17661198683565493 ]
        PP4: [||                  ] [ 0.12482885546306076 ]
        ```
        ```python
        print_coloc_result('colocalized', *coloc([1, 4, 9], [1, 4, 9]))
        ```
        ```
        colocalized
        
        PP0: [                    ] [ 0.0015168270421050444 ]
        PP1: [                    ] [ 0.001237791593959775 ]
        PP2: [                    ] [ 0.001237791593959775 ]
        PP3: [                    ] [ 1.4094001056824932e-05 ]
        PP4: [||||||||||||||||||| ] [ 0.9959934957689188 ]
        ```
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
