Metadata-Version: 1.1
Name: framed
Version: 0.5.2
Summary: framed - metabolic modeling for python
Home-page: https://github.com/cdanielmachado/framed
Author: Daniel Machado
Author-email: cdanielmachado@gmail.com
License: Apache License Version 2.0
Description: |DOI| |License| |PyPI version| |Documentation Status|
        
        FRAMED
        ======
        
        *framed* is a python package for analysis and simulation of metabolic
        models. The main focus is to provide support for different modeling
        approaches.
        
        -  Modeling: Constraint-based models, Kinetic models, Bioprocess models
        -  I/O: Import/Export from SBML and other plain text formats (including
           BioOpt)
        -  Solver support: Gurobi, CPLEX
        -  COBRA tools:
        
           -  Simulation: FBA, pFBA, loopless-FBA, MOMA, linearMOMA, ROOM
           -  Gene-wise simulation: gene-pFBA, gene-MOMA, gene-lMOMA, gene-ROOM
           -  Analysis: FVA, gene essentiality, PhPP, flux envelope plots
           -  Ensemble-based simulation (and SBML import/export of ensemble
              models)
           -  Omics integration: GIMME, E-Flux
           -  Strain design: brute force, hill climbing
        
        -  Kinetic tools:
        
           -  Time-course and steady-state simulation
           -  Steady-state flux sampling
           -  Calibration from metabolomics data
        
        -  Bioprocess modeling:
        
           -  Dynamic FBA (single and multi-species)
        
        -  Microbial community modeling:
        
           -  SMETANA
        
        Documentation
        ~~~~~~~~~~~~~
        
        For documentation and API please check: http://framed.readthedocs.io/
        
        Instalation from PyPI (stable releases)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        ::
        
            pip install framed
        
        Instalation from github (latest development release)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        ::
        
            pip install https://github.com/cdanielmachado/framed/archive/master.zip
        
        Credits and License
        ~~~~~~~~~~~~~~~~~~~
        
        Developed at:
        
        -  The Novo Nordisk Fundation Center for Biosustainability (2013)
        -  Centre of Biological Engineering, University of Minho (2014-2015)
        -  European Molecular Biology Laboratory (2016-2017)
        
        Released under an Apache License.
        
        .. |DOI| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.240430.svg
           :target: https://doi.org/10.5281/zenodo.240430
        .. |License| image:: https://img.shields.io/badge/License-Apache%202.0-blue.svg
           :target: https://opensource.org/licenses/Apache-2.0
        .. |PyPI version| image:: https://badge.fury.io/py/framed.svg
           :target: https://badge.fury.io/py/framed
        .. |Documentation Status| image:: http://readthedocs.org/projects/framed/badge/?version=latest
           :target: http://framed.readthedocs.io/en/latest/?badge=latest
        
Keywords: metabolism modeling
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 2.7
Classifier: License :: OSI Approved :: Apache Software License
